FastQCFastQC Report
Wed 8 May 2024
EGAF00007961051

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961051
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences574221
Total Bases17.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25590.4456472333822692No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21410.3728529607938407No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14930.2600044233840281No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13250.23074739516666928No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG12920.22500047890968805No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12790.22273654220239247No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11620.20236111183673183No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11540.2009679200168576No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10940.1905189813678009No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10360.18041834067371273No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC10160.17693536112402716No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9680.16857621020478178No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9370.16317759190276915No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG9260.1612619531504421No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8720.15185790836629104No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8250.14367290642452993No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC7890.13740354323509588No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7750.134965457550316No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7480.13026343515824046No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7460.1299151372032719No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7440.12956683924830334No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6960.12120768832905798No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6950.1210335393515737No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5940.10344449262566155No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5890.10257374773824016No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)