FastQCFastQC Report
Wed 8 May 2024
EGAF00007961052

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961052
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences561860
Total Bases24.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG12980.23101840316092975No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7890.14042644075036487No Hit
GCGTTCCAGGACGTTACCTTGGGAACGGTTCTCCGCATCACGCT7740.13775673655358986No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7650.13615491403552485No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6990.12440821556971489No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6330.11266151710390489No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6280.11177161570497988No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)