FastQCFastQC Report
Wed 8 May 2024
EGAF00007961053

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961053
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences561860
Total Bases17.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCCGGGCATTAACCCAATCAGCAAAACCG13310.23689175239383475No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11740.2089488484675898No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11340.2018296372761898No Hit
CGTCAGCGTGACGCAGAAAACCGTAGCCAGG8650.15395294201402485No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7690.13686683515466486No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7600.13526501263659985No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7220.12850176200476987No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6810.12120457053358488No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6290.1119495959847649No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5660.10073683835830989No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)