FastQCFastQC Report
Wed 8 May 2024
EGAF00007961054

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961054
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences541768
Total Bases23.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG12140.22408115650979754No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8090.14932591072193263No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7760.14323474254662513No Hit
GCGTTCCAGGACGTTACCTTGGGAACGGTTCTCCGCATCACGCT6810.12569956143589137No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6340.1170242613074231No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6200.11444012935426233No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5910.10908728459414362No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5690.10502650581060528No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)