FastQCFastQC Report
Wed 8 May 2024
EGAF00007961055

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961055
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences541768
Total Bases16.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28560.5271629184447956No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG12450.22980316297751066No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11530.21282172442816852No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10460.1930715730718684No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7650.14120435315485594No Hit
CGTCAGCGTGACGCAGAAAACCGTAGCCAGG7550.139358544616884No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6740.124407495459311No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6180.11407096764666795No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6130.11314806337768196No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5430.10022740361187814No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)