FastQCFastQC Report
Wed 8 May 2024
EGAF00007961056

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961056
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences566867
Total Bases24.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG12310.21715852219303644No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8490.14977058110632654No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7960.14042094530110236No Hit
GCGTTCCAGGACGTTACCTTGGGAACGGTTCTCCGCATCACGCT7300.12877800260025718No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6930.1222508983588743No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6420.11325407899913031No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6160.10866746520788828No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5880.10372803497116607No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)