FastQCFastQC Report
Wed 8 May 2024
EGAF00007961057

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961057
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences566867
Total Bases17.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCCGGGCATTAACCCAATCAGCAAAACCG12500.22051027842509796No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12120.21380676596097498No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11590.20445713015575084No Hit
CGTCAGCGTGACGCAGAAAACCGTAGCCAGG8060.14218502752850318No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7990.1409501699693226No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7780.13724559729178096No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6940.12242730658161438No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6620.11678224345393189No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6370.11237203788542992No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6260.11043154743528906No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)