FastQCFastQC Report
Wed 8 May 2024
EGAF00007961058

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961058
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences551722
Total Bases24.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG12050.21840709632749825No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7840.14210055063963373No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7570.137206781676279No Hit
GCGTTCCAGGACGTTACCTTGGGAACGGTTCTCCGCATCACGCT6790.12306922689325421No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6110.11074417913369415No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5770.10458165525391412No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5760.10440040455156764No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)