FastQCFastQC Report
Wed 8 May 2024
EGAF00007961059

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961059
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences551722
Total Bases17.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24130.437357944762036No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG12280.22257586248146713No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10960.19865076977173285No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10940.19828826836703994No Hit
CGTCAGCGTGACGCAGAAAACCGTAGCCAGG7710.1397442915091296No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7460.1352130239504678No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6570.11908171144163182No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6350.11509419599000947No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6000.10875042140788295No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5670.10276914823044939No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)