FastQCFastQC Report
Wed 8 May 2024
EGAF00007961061

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961061
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences564875
Total Bases17.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16150.2859039610533304No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14140.25032086744855053No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12100.21420668289444567No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10260.1816331046691746No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9270.1641071033414472No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8360.14799734454525337No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8180.14481079884930295No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7930.14038504093826068No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7850.13896879840672716No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7450.1318875857490595No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7060.1249834034078336No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6850.1212657667625581No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6540.11577782695286568No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6390.11312237220624032No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6000.10621818986501438No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5740.10161540163753044No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)