FastQCFastQC Report
Wed 8 May 2024
EGAF00007961063

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961063
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences542091
Total Bases16.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26510.4890322842474788No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14950.2757839550924107No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13760.25383192120880077No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11540.21287938740912501No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10640.19627700884168892No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8650.15956730512035802No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8020.14794564012315276No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7670.1414891595691498No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7660.14130468869617832No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7240.13355691203137482No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6640.12248865965308407No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6460.11916818393959686No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6450.11898371306662535No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6050.11160487814776486No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5700.10514839759376193No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)