FastQCFastQC Report
Wed 8 May 2024
EGAF00007961065

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961065
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences569145
Total Bases17.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16280.2860430997373253No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14410.25318679774047037No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12710.22331743228878406No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11040.19397517328624514No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9170.16111887128939023No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8430.1481169122104209No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8150.14319725201837843No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7800.13704767677832538No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7460.13107380368798813No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7360.1293167821908301No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7020.12334290910049285No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6990.12281580265134544No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6780.1191260575073136No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6540.11490920591413435No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6260.10998954572209191No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)