FastQCFastQC Report
Wed 8 May 2024
EGAF00007961067

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961067
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences553946
Total Bases17.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24670.4453502687987638No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15600.28161589757846434No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14240.2570647680459828No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11750.2121145382401895No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10390.18756340870770796No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9340.1686084925245421No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8100.14622363912727956No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7810.14098847180050042No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7620.1375585345864037No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7260.13105970618074686No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7010.1265466308990407No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6990.12618558487650422No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6760.12203355561733453No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6290.11354897408772696No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)