FastQCFastQC Report
Wed 8 May 2024
EGAF00007961069

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961069
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480187
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27510.5729018070043546No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15930.3317457573820199No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12760.2657298094284102No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12630.2630225308057069No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12350.25719146915680763No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9360.19492406083463318No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9200.19159202560669072No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8840.18409494634382023No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7700.16035419534473028No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7700.16035419534473028No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7220.15035808966090294No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7050.1468178022312141No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6900.14369401920501804No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6890.14348576700327165No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6810.14181974938930042No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6780.1411949927840612No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6400.1332814091176979No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6390.1330731569159515No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6360.13244840031071228No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC6250.13015762609150186No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6160.12828335627578422No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6010.12515957324958818No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5910.12307705123212416No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC5810.12099452921466013No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5770.12016152040767451No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT5630.11724598958322487No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5540.11537171976750724No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5490.11433045875877523No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5310.11058191912733997No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5240.10912415371511514No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5230.10891590151336875No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5230.10891590151336875No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)