FastQCFastQC Report
Wed 8 May 2024
EGAF00007961071

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961071
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454474
Total Bases14 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG53841.1846662295312824No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14960.3291717457984395No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11510.25325981244251594No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11460.25215963949532866No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11050.24313822132839286No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8980.19759106131483872No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8150.17932819039152956No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7970.17536756778165527No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7110.15644459309003375No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7100.1562245585005963No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6950.1529240396590344No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6750.1485233478702852No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6630.14588293279703568No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6370.14016203347166173No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6340.13950192970334938No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6190.13620141086178747No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6160.1355413070934751No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6050.13312092660966304No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6020.13246082284135066No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC5990.13180071907303828No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5740.12629985433710178No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5680.12497964680047705No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5670.12475961221103957No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5550.12211919713779006No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC5340.1174984707596034No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5330.11727843617016595No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT5320.11705840158072849No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5270.11595822863354119No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5200.11441798650747897No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5180.11397791732860404No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5160.11353784814972913No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5130.11287774438141676No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT4730.10407636080391838No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)