FastQCFastQC Report
Wed 8 May 2024
EGAF00007961073

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961073
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481991
Total Bases14.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27370.5678529267143992No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16330.33880300669514574No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12320.2556064324852539No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12220.2535317049488476No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11230.2329919023384254No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9750.20228593479961243No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9320.19336460639306544No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8560.1775966771163777No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7950.16494083914429936No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7560.15684940175231488No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7330.15207752841858044No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7230.15000280088217416No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7200.14938038262125225No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7160.14855049160668976No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7050.14626829131664285No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6830.14170389073654902No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6690.13879927218558025No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6650.1379693811710177No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6600.13693201740281458No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6440.13361245334456454No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6400.132782562330002No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC6120.12697332522806443No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT5760.11950430609700181No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5750.11929683334336119No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5650.1172221058069549No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5570.11556232377782988No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5550.11514737827054862No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5530.11473243276326738No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5500.11411001450234548No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5470.1134875962414236No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC5440.1128651779805017No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5330.1105829776904548No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)