FastQCFastQC Report
Wed 8 May 2024
EGAF00007961075

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961075
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462560
Total Bases14.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG51831.1205032860601867No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15090.3262279488066413No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12100.26158768592182635No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11920.25769629885852646No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11070.2393203043929436No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9220.199325492909028No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8170.17662573503977863No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8090.174896229678312No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7360.1591144932549291No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7180.1552231061916292No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7110.1537097890003459No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7090.15327741265997924No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6830.14765652023521272No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6730.14549463853337946No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6670.1441975095122795No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6460.1396575579384296No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6400.13836042891732964No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC6280.1357661708751297No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6230.1346852300242131No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6140.13273953649256312No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5950.1286319612590799No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5710.12344344517468005No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5670.12257869249394672No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5620.1214977516430301No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5570.12041681079211346No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT5530.11955205811138014No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5410.11695780006918022No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5340.11544448287789692No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5230.11306641300588031No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC5160.11155309581459703No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5070.10960740228294708No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5010.10831027326184711No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT4820.10420269802836389No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)