FastQCFastQC Report
Wed 8 May 2024
EGAF00007961076

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961076
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488817
Total Bases21.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT28930.5918370269446439No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC24690.5050969994906068No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA18760.383783706376824No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA18650.38153337547589383No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15320.31340972183864313No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC14920.3052267003807151No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT13990.2862011754910324No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT13660.2794501827882418No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT13300.2720854634761066No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG12510.25592399609669875No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA12080.24712724802942615No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC11750.24037625532663554No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11120.22748799653039892No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT10480.21439516219771407No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT9360.19148270211551563No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC9120.1865728892407588No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9090.1859591626314142No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC8030.16427415576790497No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA8020.16406958023145676No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7940.16243297593987116No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7080.1448394798053259No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6660.1362473072745015No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6500.13297409869133028No Hit
CCAGTTACCATCTTCGGTGGTGCGTTCGACGTGGCAACGTGCCA6380.1305191922539519No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6340.1297008901081591No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT6300.1288825879623663No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6200.12683683259788428No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC6180.12642768152498787No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5600.11456230041099226No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5410.11067536521847643No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5300.10842503431754624No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5280.10801588324464984No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5010.10249234376054843No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4970.10167404161475563No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)