FastQCFastQC Report
Wed 8 May 2024
EGAF00007961077

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961077
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488817
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC32930.6736672415239241No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG29940.6124991561259121No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27910.5709703222269275No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT21320.4361550437075634No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20940.4283811733225317No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA20120.4116059793337793No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC17980.3678268145338644No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG17090.3496195917899746No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG16400.33550387977504875No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG15060.3080907578909899No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC14770.30215806733399203No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG13340.27290376562189944No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG12450.2546965428780096No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG11200.22912460082198452No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11060.2262605433117097No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG11000.2250330900930205No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC10850.22196445704629747No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC9530.194960486235135No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC9050.1851408604856214No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8900.1820722274388984No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7850.16059179611183735No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7530.15404537894549494No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7460.15261335019035754No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC7020.14361202658663672No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6870.1405433935399137No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6810.1393159403212245No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6430.13154206993619288No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6410.13113291886329648No Hit
GACGACCCGGGTGAAGGCCCGTCTACTGGCC6400.13092834332684827No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6330.12949631457171087No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC6200.12683683259788428No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5920.12110871757733466No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5810.11885838667640447No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5770.11804008453061166No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5680.11619890470257786No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5630.11517602702033686No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5610.11476687594744045No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT4940.10106031500541103No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)