FastQCFastQC Report
Wed 8 May 2024
EGAF00007961078

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961078
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460890
Total Bases20.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT25460.552409468636768No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23420.5081472802621015No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17500.3797001453709128No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15890.34476773199678884No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA14670.3182972075766452No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC13880.301156458157044No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT13090.2840157087374428No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT12570.27273319013213565No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12490.27099741803901145No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG11370.24669660873527308No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11180.24257415001410315No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC11160.24214020699082212No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10630.23064071687387447No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT9400.2039532209420903No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC8410.18247304128967867No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8270.17943544012671137No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC8100.17574692442882248No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8070.17509600989390092No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7160.15535160233461348No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7100.15404977326477035No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6520.14146542558962008No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6430.1395126819848554No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6330.13734296686845016No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT6160.1336544511705613No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5870.1273622773329862No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5780.12540953372822147No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC5460.1184664453557248No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5440.11803250233244375No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5260.11412701512291436No Hit
CCAGTTACCATCTTCGGTGGTGCGTTCGACGTGGCAACGTGCCA4980.10805181279697977No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4740.10284449651760724No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4730.10262752500596671No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)