FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007961079

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961079
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460890
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG53251.1553732994857775No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC31820.6904033500401396No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG26990.5856061099177678No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19540.42396233374557923No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA19170.41593438781487985No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18490.4011803250233244No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC16740.3632103104862332No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16470.35735207967193905No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG16050.3482392761830372No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG13840.3002885721104819No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13370.2900909110633774No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG11950.2592809564104233No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11730.25450758315433186No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10930.2371498622230901No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG10330.22413157152465885No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC10100.21914122675692682No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9450.2050380785002929No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC9000.19527436047646943No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8670.18811430059233222No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7570.16424743431187486No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7030.15253097268328666No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7030.15253097268328666No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC7000.1518800581483651No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6680.14493696977586842No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6610.14341816919438477No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6280.13625810931024757No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6020.130616850007594No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5990.12996593547267243No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5720.12410770465837836No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC5640.1223719325652542No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5610.12172101803033261No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5450.11824947384408427No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5240.11369307209963331No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5230.1134761005879928No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5200.11282518605307122No Hit
GACGACCCGGGTGAAGGCCCGTCTACTGGCC5080.11022152791338496No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5030.10913667035518236No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT4710.10219358198268566No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)