FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007961080

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961080
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492447
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT29830.6057504665476691No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC26520.538535111392698No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA19170.38928047079178063No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA18660.37892402634192107No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA16080.3265326014779255No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC14590.296275538281277No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT13910.2824669456814642No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT13570.2755626493815578No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT13110.2662215426228609No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG12360.2509914772554204No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11640.23637061450267746No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC11540.23433993912035206No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10530.21383011775886543No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT10450.2122055774530051No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC9320.189258945632728No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8950.18174544671812398No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC8550.17362274518882237No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8500.17260740749765965No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8490.1724043399594271No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA8420.17098286719179934No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7440.15108224844501034No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7180.14580249245096427No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7090.1439748846068714No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6860.13930433122752295No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT6700.13605525061580231No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6200.12590187370417527No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6140.12468346847478001No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5810.11798223971310619No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5740.1165607669454784No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5720.11615463186901331No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC5610.11392088894845535No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5360.10884420049264185No Hit
CCAGTTACCATCTTCGGTGGTGCGTTCGACGTGGCAACGTGCCA5260.10681352511031643No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)