FastQCFastQC Report
Wed 8 May 2024
EGAF00007961081

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961081
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492447
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC35450.719874423034357No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG30400.6173253162269239No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27670.5618878782894403No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21690.4404534904263809No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT21220.4309093161294515No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA20880.4240050198295451No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG18260.3708013248126194No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC17920.36389702851271305No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG17550.35638352959810904No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG15200.30866265811346194No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13950.28327921583439436No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12740.2587080437082569No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG12200.2477423966436997No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG11340.23027858835570122No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG10790.2191098737529115No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10680.21687613083235355No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC10560.21443932037356306No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC9380.19047735086212325No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC9250.18783747286510022No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT9100.1847914597916121No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8430.17118593473003185No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC8180.16610924627421833No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7590.15412826151849843No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC7380.14986384321561508No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7240.1470208976803595No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7080.14377181706863887No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7010.14235034430101107No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6600.1340245752334769No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6130.1244804009365475No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6120.12427733339831495No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT6110.1240742658600824No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6020.12224665801598954No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6010.122043590477757No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5880.11940371248073396No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC5700.11574849679254823No Hit
GACGACCCGGGTGAAGGCCCGTCTACTGGCC5550.11270248371906012No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5260.10681352511031643No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)