FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007961082

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961082
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471615
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT26520.5623230813269298No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23320.49447112581236813No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA19410.4115645176680131No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA17230.36534037297371796No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15890.33692736660199524No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC14300.3032134262056974No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT13520.286674512049023No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT13180.27946524177560084No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT12820.27183189678021263No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG12460.2641985517848245No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11690.2478716749891331No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC10770.2283642377786966No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10580.22433552792001948No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT10300.21839848181249535No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8710.18468454141619753No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC8640.1832002798893165No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8400.17811138322572437No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC7820.16581321628871007No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7800.16538914156674406No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7330.1554233856005428No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7070.1499104142149847No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6730.1427011439415625No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT6350.13464372422420828No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6320.13400761214125928No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6270.13294742533634427No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6000.12722241658980313No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC5790.12276963200916001No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5410.11471221229180581No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5410.11471221229180581No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5390.11428813756983981No Hit
CCAGTTACCATCTTCGGTGGTGCGTTCGACGTGGCAACGTGCCA5290.11216776396000974No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5080.10771497937936665No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4990.1058066431305196No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG4900.10389830688167256No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)