FastQCFastQC Report
Wed 8 May 2024
EGAF00007961083

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961083
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471615
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG53081.1254943120977916No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC31570.6694019486233475No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG27790.5892518261717714No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA20390.43234417904434763No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20010.4242867593269934No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT19980.4236506472440444No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG17790.3772144651887663No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC17360.36809685866649705No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG16270.3449847863193495No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG14020.2972763800981733No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13920.2951560064883433No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12710.2694994858093996No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG11710.24829574971109908No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG10970.23260498499835672No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG10480.22221515431018946No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10340.21924663125642735No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC10060.21330958514890322No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC9450.20037530612893995No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC8870.18807713919192562No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7890.1672974778155911No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7360.15605949768349184No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7210.15287893726874674No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7050.14948633949301868No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC6880.14588170435630757No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6740.14291318130254552No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6520.1382483593609194No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6270.13294742533634427No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6070.12870667811668415No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5910.12531408034095606No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC5780.12255759464817702No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5560.1178927727065509No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5540.11746869798458488No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5500.11662054854065286No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5420.11492424965278883No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5380.11407610020885679No Hit
GACGACCCGGGTGAAGGCCCGTCTACTGGCC5370.1138640628478738No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5300.11237980132099276No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA4820.1022020079938085No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)