FastQCFastQC Report
Wed 8 May 2024
EGAF00007961100

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961100
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482862
Total Bases21.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC19460.4030136974953506No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT17860.3698779361391039No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17790.36842824657976814No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG14680.30402061044356354No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14590.3021567238672747No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA14370.2976005566807908No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13290.2752339177653243No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13150.27233453864665264No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG13060.2704706520703638No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13040.2700564550534107No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG12860.2663286819008329No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12360.2559737564770059No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA11980.24810401315489725No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT10840.22449478318857147No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10610.219731517493611No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10220.21165467566302587No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT10180.2108262816291197No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG9960.20627011444263577No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9440.19550099200185558No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG8980.18597446061193468No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8780.18183249044240382No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8500.17603373220506066No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7630.1580161619676015No Hit
AACCAGCGGTACCAGGGACAGCTGCAGGCGTGGCGGACCGGTTT6690.13854890217080656No Hit
TGGCAGGTCCGGCTGCGGCGGCAGCATTGGACGCGCCGGGGCGG6670.13813470515385348No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6660.13792760664537693No Hit
GCTCGGCTCCTGCTGCATCTGGGTGATTTCGCGGCCAGCACGCA6000.12425910508592516No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT5950.12322361254354247No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5940.12301651403506592No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5910.12239521850963629No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5830.12073843044182397No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG5500.11390417966209807No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5500.11390417966209807No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5470.11328288413666844No Hit
CGGGTCCTGGGACCACGGAGCCCACGGATGACGGTAGCACGGGT5250.10872671695018453No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5160.10686283037389564No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5000.10354925423827098No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4910.1016853676619821No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4910.1016853676619821No Hit
CGGGGTCAGGCGAGGCTGGGACAGCGGAGACAGAATGGTCGGCG4850.10044277661112284No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)