FastQCFastQC Report
Wed 8 May 2024
EGAF00007961101

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961101
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482862
Total Bases14.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28120.582361005836036No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24360.5044919666488562No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23590.4885453814961625No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21290.44091272454655783No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC19640.4067414706479284No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA18350.3800257630544545No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC15950.3303221210200844No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14930.30919807315547715No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14450.29925734474860316No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14430.29884314773165005No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC13880.28745272976544023No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA13810.28600304020610445No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13700.2837249566128625No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13560.2808255774941909No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC13540.2804113804772378No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC11360.23526390562935165No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC11340.23484970861239857No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC10550.21848892644275175No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC10360.21455405478169745No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9880.20461332637482346No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9620.19922876515443333No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9260.19177321884927787No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8120.16816398888295206No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7930.16422911722189779No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7630.1580161619676015No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7380.15283869925568797No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCT7340.15201030522178177No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACC6840.1416553797979547No Hit
ATCGTCACCCCACCGTCCGCGCGTCCGCGTA6710.13896309918775965No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6300.13047206034022144No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA6260.12964366630631524No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6020.12467330210287825No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5800.12011713491639434No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT5780.11970293789944125No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT5760.11928874088248816No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5690.11783905132315238No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5670.11742485430619928No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5340.1105906035264734No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5300.10976220949256722No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5210.10789832291627835No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC5020.10396345125522406No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)