FastQCFastQC Report
Wed 8 May 2024
EGAF00007961105

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961105
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487317
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27680.5680080932945085No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24850.5099350115017535No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24270.49803310781277893No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22110.4537087768331497No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC19760.40548554636920114No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA18150.372447503370496No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC16530.339204255135774No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15430.3166316791739258No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15140.3106807273294385No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA14350.2944695136841112No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14110.28954458801970795No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC14040.28810815136759027No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13520.2774374790947166No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13270.27230734819429653No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC12880.26430434398964125No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC11860.2433734099159274No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC11130.22839342768670085No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC10830.22223727060619677No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC10370.21279782974942388No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10150.20828331455705423No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9560.19617620563206292No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9500.19494497421596207No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9200.18878881713545803No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9100.18673676477529003No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7930.16272775216132415No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCT7740.1588288526770049No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7290.14959461705624882No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACC7270.1491842065842152No Hit
ATCGTCACCCCACCGTCCGCGCGTCCGCGTA6800.1395395604914255No Hit
AAAGACGATGAAGTGATGGAACAGCGTGTCA6720.1378979186032911No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT6290.1290740934545686No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6220.12763765680245096No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6040.12394396255414854No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6040.12394396255414854No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT6010.12332834684609813No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA5840.11983985783381249No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5570.11429931646135882No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5530.11347849551729162No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5320.10916918556093877No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5200.10670672272873716No Hit
GCCAACTACATCGTCCGTCAGAGCCGCGGTG4940.10137138659230029No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)