FastQCFastQC Report
Wed 8 May 2024
EGAF00007961109

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961109
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507042
Total Bases15.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA30180.5952169642751488No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30140.5944280749918153No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28820.5683947286418088No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13980.27571680452506897No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12250.24159734302089372No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10290.20294176813755072No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9770.19268620745421483No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7890.1556084111375389No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7880.15541118881670551No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7210.1421972933208689No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6810.1343084004875336No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6630.1307583987125327No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5680.11202227823336133No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)