FastQCFastQC Report
Wed 8 May 2024
EGAF00007961111

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961111
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478763
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57071.192030294738733No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28100.5869292322088382No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27840.5814985702738098No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13490.28176780578281946No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11440.2389491251412494No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10010.20908048449859326No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8950.18694009353270824No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7720.16124888514776622No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7080.14788110192308093No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7050.14725448708442382No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6630.1384818793432241No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG5780.12072779224793896No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)