FastQCFastQC Report
Wed 8 May 2024
EGAF00007961113

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961113
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508857
Total Bases15.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31050.6101910752922727No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA30480.5989894999970522No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30390.5972208302135964No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14600.28691754264950664No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12370.24309383579276694No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9570.18806855364080674No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9390.18453121407389503No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8300.16311065780759623No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8180.1607524314296551No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7360.1446378845137239No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7180.14110054494681218No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6540.1285233375977927No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6180.12144865846396924No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)