FastQCFastQC Report
Wed 8 May 2024
EGAF00007961115

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961115
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487122
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG56461.15905255767549No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28570.5865060498191418No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28430.5836320264738608No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13150.2699529070746138No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12050.24737129507597685No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9980.20487680704217834No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8430.1730572628622809No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7530.1545813984997598No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7340.15068093824544979No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7220.14821748966378032No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6670.1369266836644619No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG5740.11783495715652341No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG4910.10079610446664285No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)