FastQCFastQC Report
Wed 8 May 2024
EGAF00007961117

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961117
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502573
Total Bases15.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA44730.8900199572997356No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA30750.6118514126306029No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29450.5859845236413417No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA21840.43456373501958917No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA19660.3911869519452896No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC19380.38561562200914096No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT16130.3209483995359878No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT15500.3084129071796535No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15430.3070200746956164No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC14090.28035728142976246No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC12570.2501129189192416No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC11390.2266337427597583No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC11200.22285319744594317No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA10900.21688391537149826No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC9770.1943996195577558No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC9620.19141497852053335No Hit
GTGGCCCCGCTGCGTGCGTCCATGGGTCCGG9330.1856446725152366No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG8780.1747009887120876No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8000.15918085531853085No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7970.15858392711108635No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7570.1506248843451598No Hit
TTCTCCCAGGTTGCTGACGTAGTCCGTGCAC7080.14087505695689978No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG6560.13052830136119528No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6050.12038052183463895No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG6030.11998256969634263No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5950.11839076114315732No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5860.11659997652082384No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC5790.1152071440367867No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT5780.11500816796763853No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5570.11082967051552708No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT5310.10565629271767484No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5150.10247267561130423No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG5050.10048291491982259No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)