FastQCFastQC Report
Wed 8 May 2024
EGAF00007961119

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961119
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476128
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG56211.180564890113583No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA41580.8732945762484038No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA28090.5899674037233685No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA20280.4259358827878218No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC18440.3872908125546072No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA18130.38077995833053296No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT16190.3400346125411654No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT15310.32155218764701926No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14420.3028597351972579No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC12190.25602359029504673No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC12110.25434336985012435No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC10660.2238893742859063No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA10220.21464816183883328No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC10220.21464816183883328No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC9370.19679581961153303No Hit
GTGGCCCCGCTGCGTGCGTCCATGGGTCCGG8670.18209389071846227No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC8640.18146380805161638No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG7990.1678120169366221No Hit
TTCTCCCAGGTTGCTGACGTAGTCCGTGCAC7850.16487163115800793No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7560.15878083204516433No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7540.15836077693393374No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6930.14554909604140065No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5940.12475636803548626No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5770.12118589959002621No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5740.12055581692318033No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT5740.12055581692318033No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5500.1155151555884132No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5470.11488507292156731No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5430.11404496269910612No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC5120.10753410847503192No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT4780.10039317158411183No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)