FastQCFastQC Report
Wed 8 May 2024
EGAF00007961121

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961121
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505332
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA45710.9045538378729231No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA30690.607323502172829No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28290.5598299731661561No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA22360.44248137857883535No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC19520.3862807025876058No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA19490.38568703347502237No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT17790.35204578376196244No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT16540.32730957073765365No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14460.2861485122652039No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC14290.2827843872938979No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC13220.2616101889450896No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC11860.2346971891746416No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC11360.2248027039649181No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA10730.21233565260066647No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC10120.2002643806448038No Hit
GTGGCCCCGCTGCGTGCGTCCATGGGTCCGG9720.19234879247702502No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC9470.18740154987216326No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG8590.1699872559030499No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7960.15752020453879825No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7920.1567286457220204No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7570.14980250607521392No Hit
TTCTCCCAGGTTGCTGACGTAGTCCGTGCAC7440.1472299399206858No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG6880.1361481164857955No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6630.1312008738809337No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG6370.1260557415718775No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC6250.12368106512154387No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6040.11952538133345998No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6020.11912960192507105No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT5880.11635914606634847No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT5310.10507943292726366No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5270.10428787411048578No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)