FastQCFastQC Report
Wed 8 May 2024
EGAF00007961123

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961123
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485876
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG54771.1272423416674213No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA43670.8987889914299121No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA28840.5935670829594383No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA21250.43735438671595217No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA19240.3959858070783492No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC17590.36202652528628704No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT16680.3432974668433922No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT15450.3179823658711276No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13410.27599634474639617No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC13230.2722916958236258No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC11980.24656496719327567No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC10710.22042661090483992No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA10450.21507545134972708No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC10340.2128114992302563No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC9330.19202430249693336No Hit
GTGGCCCCGCTGCGTGCGTCCATGGGTCCGG9310.19161267483884778No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC8940.18399756316426413No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG8010.16485687706328364No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7810.1607406004824276No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7680.1580650207048712No Hit
TTCTCCCAGGTTGCTGACGTAGTCCGTGCAC7540.155183627098272No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7370.15168479200454438No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG6650.1368661963134627No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6120.12595806337419424No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT6090.12534062188706585No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG6030.12410573891280903No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5710.11751969638343938No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC5610.11546155809301138No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5550.11422667511875459No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5490.11299179214449777No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT4970.1022894730342721No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)