FastQCFastQC Report
Wed 8 May 2024
EGAF00007961133

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961133
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506496
Total Bases15.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30300.5982278241091736No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12600.2487680060652009No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9110.17986321708364925No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8600.16979403588577205No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5830.11510456153651756No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5680.11214303765478897No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5160.10187642153146323No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)