FastQCFastQC Report
Wed 8 May 2024
EGAF00007961134

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961134
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479055
Total Bases21 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8210.17137906920917223No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6810.14215486739518426No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5930.12378536911210614No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC4960.10353717214098589No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4950.10332842784231457No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4830.10082349625825844No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)