FastQCFastQC Report
Wed 8 May 2024
EGAF00007961135

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961135
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479055
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57661.2036196261389611No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12040.25132813560029643No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8640.18035507405203993No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8430.17597144377994178No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5740.11981922743735061No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5340.11146945549049693No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5090.10625084802371335No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)