FastQCFastQC Report
Wed 8 May 2024
EGAF00007961136

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961136
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507654
Total Bases22.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9210.18142278008249713No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6930.1365103003226607No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6600.13000980983110544No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5130.10105307945963195No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5110.10065911033893163No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)