FastQCFastQC Report
Wed 8 May 2024
EGAF00007961137

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961137
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507654
Total Bases15.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28850.5683004566102109No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12770.251549283567154No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9420.1855594558498505No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9020.1776800734358441No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5860.11543295236519362No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5580.10991738467538914No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)