FastQCFastQC Report
Wed 8 May 2024
EGAF00007961139

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961139
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486432
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57511.1822824156305507No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12510.2571788040260509No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8840.18173146503519505No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8170.16795770015130584No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5770.11861884086573252No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5400.11101243339253995No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4900.10073350437471218No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)