FastQCFastQC Report
Wed 8 May 2024
EGAF00007961141

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961141
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469268
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28130.5994442408176138No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG20280.43216243170214036No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16070.34244823853320494No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11630.24783279490610907No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10120.21565502015905624No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9790.20862279124082614No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8700.18539512602606611No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8300.17687121218578722No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG8010.17069137465158501No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6830.14554582882276226No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6420.13680881713647638No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6190.13190756667831602No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6130.13062897960227418No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6050.1289241968342184No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5920.12615392483612775No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5870.1250884356060929No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5450.11613832607380004No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4720.10058218331529105No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)