FastQCFastQC Report
Wed 8 May 2024
EGAF00007961143

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961143
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442916
Total Bases13.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG54561.2318362849840603No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG19010.42920102231574386No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14090.3181190112797912No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10790.2436127843654327No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8960.20229569489474303No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8730.19710283665525744No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8110.18310469705316584No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG7800.17610562725212003No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6770.15285065339703238No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6590.14878667738352191No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6450.14562580715079157No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5820.13140189110350498No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5630.12711213864479948No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5490.1239512684120691No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5460.12327393907648403No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4910.11085623459075762No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4820.10882424658400237No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)