FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007961145

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961145
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472196
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27550.5834441630170523No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG21260.4502367660886581No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16250.3441367567704936No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11300.23930740624655863No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10080.2134706774305585No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9630.20394073647383715No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8800.18636328982032885No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG8360.1770451253293124No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7640.1617972197985582No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7130.15099662004760733No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6760.14316089081652536No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6100.12918364408000066No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6030.12770120882006625No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5740.12155969131462359No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5610.11880659726045964No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5560.11774771493193505No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5370.11372396208354157No Hit
AGCGAACAGGCAGCGGAAGCGATGGAAGTTG5100.10800599750950876No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)