FastQCFastQC Report
Wed 8 May 2024
EGAF00007961147

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961147
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449823
Total Bases13.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG52791.1735727163795537No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG19860.44150699275048183No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14920.3316860187229199No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11010.24476294008976862No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9040.20096793627715792No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8990.1998563879570409No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG7640.16984458331388122No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7620.16939996398583443No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7290.16206374507306207No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6890.15317135851212588No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6580.14627975892740033No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6260.1391658496786514No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5560.12360417319701306No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5440.12093645722873218No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5240.11649026394826409No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5230.1162679542842407No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5050.11226638033181939No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)