FastQCFastQC Report
Wed 8 May 2024
EGAF00007961148

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961148
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496804
Total Bases21.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10290.20712393620019162No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9230.18578755404545857No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG9100.18317082793214226No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8760.17632708271269956No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA8620.173509069975282No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6050.1217784075812594No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT5940.11956425471614561No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5060.10185103179523514No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)