FastQCFastQC Report
Wed 8 May 2024
EGAF00007961149

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961149
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496804
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30740.6187550824872585No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21500.43276624181769874No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10570.21275996167502675No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA9410.18941071327928116No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC8760.17632708271269956No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8260.1662627515076368No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6630.1334530317791322No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6040.12157712095715814No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5240.10547419102905774No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5190.10446775790855148No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5150.10366261141214643No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)