FastQCFastQC Report
Wed 8 May 2024
EGAF00007961150

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961150
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468670
Total Bases20.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10190.21742377365737087No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8980.1916060340964858No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG8380.17880384919026182No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8190.17474982396995753No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA7430.15853372308874047No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT6260.13356946252160368No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5400.11521966415601596No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4890.10433780698572556No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)