FastQCFastQC Report
Wed 8 May 2024
EGAF00007961151

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961151
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468670
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG59411.2676296754646126No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20610.43975505152879424No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10430.22254464761986048No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA8540.18221776516525487No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7920.16898884076215676No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC7600.1621610088121706No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6080.1297288070497365No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5920.12631489107474342No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5040.10753835321228157No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5000.1066848742185333No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4970.10604476497322209No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4700.1002837817654213No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)